PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_896F9F33B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 210aa    MW: 24409.6 Da    PI: 6.972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_896F9F33B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.9e-171222021199
                            HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                             ++  l +p +f  eh  +   ++ ++l de+ ++++v++  r +s++  l +GW+eF+ +n+L egD +vF+l++r  f  +v +fr
  Traes_2DS_896F9F33B.1 122 QSLTSLHIPAQFSMEHLPD--HGMRMVLVDEEEEEFKVRY--RPHSSS--LVAGWSEFAVDNELVEGDCLVFQLIKRALF--KVYIFR 201
                            4445589*****9999533..6789***************..999988..889**********************98888..999999 PP

                            S CS
                     B3  99 k 99 
                            +
  Traes_2DS_896F9F33B.1 202 A 202
                            7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-22109203IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-21110203IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.829112203IPR003340B3 DNA binding domain
CDDcd100171.69E-22114201No hitNo description
SMARTSM010194.0E-16116203IPR003340B3 DNA binding domain
PfamPF023624.2E-14120202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAEANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAVK PRLKRKAPKP RDAADDAPPR  60
RSGRIATLPE QPDYRDNVKL GTRKPWQQKE VKPDHAYAIA KAEELQDELG SDYPTFVKPM  120
PQSLTSLHIP AQFSMEHLPD HGMRMVLVDE EEEEFKVRYR PHSSSLVAGW SEFAVDNELV  180
EGDCLVFQLI KRALFKVYIF RASSYYENDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743460.0AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228540.11e-110PREDICTED: B3 domain-containing protein Os06g0194400-like
RefseqXP_014752375.11e-110PREDICTED: B3 domain-containing protein Os06g0194400-like
SwissprotQ69V361e-72Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLW5C6M21e-155W5C6M2_WHEAT; Uncharacterized protein
STRINGMLOC_75723.11e-121(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-29B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]